Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_06625

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2793
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27


Found at i:2538 original size:9 final size:9

Alignment explanation


    Indices: 2524--2548  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

       2514 ACAAAGAGCT

                     
       2524 GCAGCTTTA
          1 GCAGCTTTA

                     
       2533 GCAGCTTTA
          1 GCAGCTTTA

                   
       2542 GCAGCTT
          1 GCAGCTT

       2549 CATTTAATCC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.20, C:0.24, G:0.24, T:0.32


Consensus pattern (9 bp):   
GCAGCTTTA
Done.