Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17276

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 361

Length: 603
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.27


Found at i:247 original size:22 final size:21

Alignment explanation


    Indices: 206--247  Score: 50
    Period size: 22  Copynumber: 2.0  Consensus size: 21

        196 GCTCCACCAG

                           *     
        206 ATCAAGTCAAAGATAGAGAAA
          1 ATCAAGTCAAAGATAAAGAAA

                                  
        227 ATCACAGTCAAA-ATCAAAGAA
          1 ATCA-AGTCAAAGAT-AAAGAA

        248 TTGAAACAAC


Statistics
Matches: 18,  Mismatches: 1, Indels: 3
        0.82            0.05        0.14

Matches are distributed among these distances:
  21    6  0.33
  22   12  0.67

ACGTcount: A:0.57, C:0.14, G:0.14, T:0.14


Consensus pattern (21 bp):   
ATCAAGTCAAAGATAAAGAAA
Done.