Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_00552

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 802

Length: 1338
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25


Found at i:1064 original size:18 final size:18

Alignment explanation


    Indices: 1041--1089  Score: 53
    Period size: 18  Copynumber: 2.7  Consensus size: 18

       1031 GTGGTGATTT

                           *  
       1041 CGGGTCAGGATCACGTTC
          1 CGGGTCAGGATCACGATC

                   *  *  *    
       1059 CGGGTCAAGACCAGGATC
          1 CGGGTCAGGATCACGATC

               *         
       1077 CGGATCAGGATCA
          1 CGGGTCAGGATCA

       1090 GATTTCGGGT


Statistics
Matches: 24,  Mismatches: 7, Indels: 0
        0.77            0.23        0.00

Matches are distributed among these distances:
  18   24  1.00

ACGTcount: A:0.24, C:0.27, G:0.33, T:0.16


Consensus pattern (18 bp):   
CGGGTCAGGATCACGATC
Done.