Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_26294

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 282

Length: 470
ACGTcount: A:0.21, C:0.39, G:0.17, T:0.22


Found at i:362 original size:39 final size:38

Alignment explanation


    Indices: 315--393  Score: 149
    Period size: 39  Copynumber: 2.1  Consensus size: 38

        305 TTCAGCACCT

                                                  
        315 ACAACTCCTCCTTCAGCCATGACCCCTGGGGAGGGCCC
          1 ACAACTCCTCCTTCAGCCATGACCCCTGGGGAGGGCCC

                                                   
        353 ACAAGCTCCTCCTTCAGCCATGACCCCTGGGGAGGGCCC
          1 ACAA-CTCCTCCTTCAGCCATGACCCCTGGGGAGGGCCC

              
        392 AC
          1 AC

        394 CAGGTTCCGC


Statistics
Matches: 40,  Mismatches: 0, Indels: 1
        0.98            0.00        0.02

Matches are distributed among these distances:
  38    4  0.10
  39   36  0.90

ACGTcount: A:0.19, C:0.42, G:0.24, T:0.15


Consensus pattern (38 bp):   
ACAACTCCTCCTTCAGCCATGACCCCTGGGGAGGGCCC
Done.