Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_37481

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 334

Length: 558
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.25


Found at i:424 original size:21 final size:21

Alignment explanation


    Indices: 390--456  Score: 71
    Period size: 21  Copynumber: 3.2  Consensus size: 21

        380 TTAGAGCGGA

                 *               
        390 GGCAGCAGAGAGGGAGGTAGC
          1 GGCAGTAGAGAGGGAGGTAGC

               *    *        *  *
        411 GGCGGTAGCGAGGGAGGCAGT
          1 GGCAGTAGAGAGGGAGGTAGC

                       *        *
        432 GGCAGTAGAGAAGGAGGTAGA
          1 GGCAGTAGAGAGGGAGGTAGC

                
        453 GGCA
          1 GGCA

        457 ACAGCTATGG


Statistics
Matches: 36,  Mismatches: 10, Indels: 0
        0.78            0.22        0.00

Matches are distributed among these distances:
  21   36  1.00

ACGTcount: A:0.28, C:0.12, G:0.52, T:0.07


Consensus pattern (21 bp):   
GGCAGTAGAGAGGGAGGTAGC
Done.