Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_10228

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 518

Length: 864
ACGTcount: A:0.20, C:0.31, G:0.25, T:0.25


Found at i:759 original size:30 final size:30

Alignment explanation


    Indices: 718--779  Score: 106
    Period size: 30  Copynumber: 2.1  Consensus size: 30

        708 GAGAGGACCT

                *                         
        718 CCTGGTCCACCACCACCACGCCCTGGAATG
          1 CCTGCTCCACCACCACCACGCCCTGGAATG

                          *               
        748 CCTGCTCCACCACCCCCACGCCCTGGAATG
          1 CCTGCTCCACCACCACCACGCCCTGGAATG

              
        778 CC
          1 CC

        780 GCCTCCCCCT


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  30   30  1.00

ACGTcount: A:0.18, C:0.52, G:0.18, T:0.13


Consensus pattern (30 bp):   
CCTGCTCCACCACCACCACGCCCTGGAATG
Done.