Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_08297

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 495

Length: 825
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.22


Found at i:491 original size:12 final size:13

Alignment explanation


    Indices: 473--509  Score: 60
    Period size: 12  Copynumber: 3.0  Consensus size: 13

        463 CGCGTCATTG

                         
        473 AAAGGTATGAGGC
          1 AAAGGTATGAGGC

                         
        486 -AAGGTATGAGGC
          1 AAAGGTATGAGGC

                         
        498 AAAGG-ATGAGGC
          1 AAAGGTATGAGGC

        510 TAGAAGGAAG


Statistics
Matches: 23,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  12   19  0.83
  13    4  0.17

ACGTcount: A:0.38, C:0.08, G:0.41, T:0.14


Consensus pattern (13 bp):   
AAAGGTATGAGGC
Done.