Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_07705

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 860

Length: 1434
ACGTcount: A:0.27, C:0.25, G:0.26, T:0.22


Found at i:1142 original size:6 final size:6

Alignment explanation


    Indices: 1131--1172  Score: 57
    Period size: 6  Copynumber: 7.0  Consensus size: 6

       1121 TGGCCCCAGC

                                        *      *      *     
       1131 GATGGG GATGGG GATGGG GATGGG TATGGG CATGGG CATGGG
          1 GATGGG GATGGG GATGGG GATGGG GATGGG GATGGG GATGGG

       1173 TGTCATGGAC


Statistics
Matches: 34,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   6   34  1.00

ACGTcount: A:0.17, C:0.05, G:0.60, T:0.19


Consensus pattern (6 bp):   
GATGGG

Done.