Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_15337

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 264
ACGTcount: A:0.18, C:0.32, G:0.22, T:0.28


Found at i:142 original size:18 final size:18

Alignment explanation


    Indices: 119--161  Score: 59
    Period size: 18  Copynumber: 2.4  Consensus size: 18

        109 GGCGCTCCAT

                              
        119 CTCCAGCTCCAGCTTCAG
          1 CTCCAGCTCCAGCTTCAG

                  * *         
        137 CTCCAGGTGCAGCTTCAG
          1 CTCCAGCTCCAGCTTCAG

              *    
        155 CTTCAGC
          1 CTCCAGC

        162 AGCTGCCCCA


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  18   21  1.00

ACGTcount: A:0.16, C:0.40, G:0.21, T:0.23


Consensus pattern (18 bp):   
CTCCAGCTCCAGCTTCAG
Done.