Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_06320

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2965
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.27


Found at i:123 original size:3 final size:3

Alignment explanation


    Indices: 115--152  Score: 58
    Period size: 3  Copynumber: 12.7  Consensus size: 3

        105 TCAAGTAGTC

                              *         *                     
        115 GAA GAA GAA GAA GAG GAA GAA AAA GAA GAA GAA GAA GA
          1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA

        153 GTACTTTTAC


Statistics
Matches: 31,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   3   31  1.00

ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00


Consensus pattern (3 bp):   
GAA

Done.