Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_04077

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 273

Length: 456
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25


Found at i:399 original size:3 final size:3

Alignment explanation


    Indices: 384--419  Score: 54
    Period size: 3  Copynumber: 12.0  Consensus size: 3

        374 AAGAGGACAT

                    *                 *                    
        384 TGA TGA CGA TGA TGA TGA TGG TGA TGA TGA TGA TGA
          1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA

        420 ATACGATGAG


Statistics
Matches: 29,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   3   29  1.00

ACGTcount: A:0.31, C:0.03, G:0.36, T:0.31


Consensus pattern (3 bp):   
TGA

Done.