Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_14625

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 225

Length: 375
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.21


Found at i:258 original size:15 final size:15

Alignment explanation


    Indices: 238--267  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        228 GCGTTATCTT

                      *    
        238 AAGTACTTGACGAAG
          1 AAGTACTTGAAGAAG

                           
        253 AAGTACTTGAAGAAG
          1 AAGTACTTGAAGAAG

        268 CACAATGTCC


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.43, C:0.10, G:0.27, T:0.20


Consensus pattern (15 bp):   
AAGTACTTGAAGAAG
Done.