Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_12445

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 941

Length: 1569
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.31


Found at i:76 original size:21 final size:21

Alignment explanation


    Indices: 18--78  Score: 65
    Period size: 20  Copynumber: 2.9  Consensus size: 21

          8 CCATGTCTAC

                                   
         18 TCCTTCC-TTTCTACTCTCGCTT
          1 TCCTTCCATTTCT-CTCTC-CTT

                   *             
         40 TCCTTCCTTTTC-CTCTCCTT
          1 TCCTTCCATTTCTCTCTCCTT

                                
         60 T-CTCTCCATTTCTCTCTCC
          1 TCCT-TCCATTTCTCTCTCC

         79 CAACAACCAC


Statistics
Matches: 35,  Mismatches: 1, Indels: 7
        0.81            0.02        0.16

Matches are distributed among these distances:
  19    2  0.06
  20   11  0.31
  21   11  0.31
  22    7  0.20
  23    4  0.11

ACGTcount: A:0.03, C:0.44, G:0.02, T:0.51


Consensus pattern (21 bp):   
TCCTTCCATTTCTCTCTCCTT
Done.