Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_15598

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 846

Length: 1410
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.30


Found at i:28 original size:12 final size:12

Alignment explanation


    Indices: 11--50  Score: 71
    Period size: 12  Copynumber: 3.3  Consensus size: 12

          1 ATGAGCACCG

                        
         11 CCGCTACCGCCA
          1 CCGCTACCGCCA

                        
         23 CCGCTACCGCCA
          1 CCGCTACCGCCA

                       *
         35 CCGCTACCGCCT
          1 CCGCTACCGCCA

                
         47 CCGC
          1 CCGC

         51 ACTCACCAAC


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  12   27  1.00

ACGTcount: A:0.12, C:0.60, G:0.17, T:0.10


Consensus pattern (12 bp):   
CCGCTACCGCCA
Done.