Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_29173

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 831

Length: 1386
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23


Found at i:995 original size:24 final size:24

Alignment explanation


    Indices: 963--1012  Score: 100
    Period size: 24  Copynumber: 2.1  Consensus size: 24

        953 CAAACCATGC

                                    
        963 AAATGTTACCGAGAATTCAACTAG
          1 AAATGTTACCGAGAATTCAACTAG

                                    
        987 AAATGTTACCGAGAATTCAACTAG
          1 AAATGTTACCGAGAATTCAACTAG

              
       1011 AA
          1 AA

       1013 TGACTCAAGA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   26  1.00

ACGTcount: A:0.44, C:0.16, G:0.16, T:0.24


Consensus pattern (24 bp):   
AAATGTTACCGAGAATTCAACTAG

Found at i:1064 original size:14 final size:14

Alignment explanation


    Indices: 1045--1071  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

       1035 GACGACAACA

                          
       1045 ACCACCACCACCAC
          1 ACCACCACCACCAC

                         
       1059 ACCACCACCACCA
          1 ACCACCACCACCA

       1072 TCATCCGCGA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.37, C:0.63, G:0.00, T:0.00


Consensus pattern (14 bp):   
ACCACCACCACCAC
Done.