Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_03465

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3036
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31


Found at i:1055 original size:20 final size:19

Alignment explanation


    Indices: 1021--1059  Score: 53
    Period size: 20  Copynumber: 2.0  Consensus size: 19

       1011 ATTCGTGATT

                                
       1021 AAGTGTATGGTAATGGTAAA
          1 AAGTGTATGGTAAT-GTAAA

                                
       1041 AAGTGTATTGG-AATGTAAA
          1 AAGTGTA-TGGTAATGTAAA

       1060 GAATATAAAC


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  19    5  0.28
  20   10  0.56
  21    3  0.17

ACGTcount: A:0.41, C:0.00, G:0.28, T:0.31


Consensus pattern (19 bp):   
AAGTGTATGGTAATGTAAA
Done.