Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_10355

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2133
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.23


Found at i:236 original size:51 final size:48

Alignment explanation


    Indices: 136--250  Score: 203
    Period size: 48  Copynumber: 2.4  Consensus size: 48

        126 GCCATCCACC

                               *                            
        136 GCAACTCCGCCGCCAACTACCACTCCTTCCACACCACCACCAACCGCA
          1 GCAACTCCGCCGCCAACTAACACTCCTTCCACACCACCACCAACCGCA

                                         *                  
        184 GCAACTCCGCCGCCAACTAACACTCCTTCTACACCACCACCAACCGCA
          1 GCAACTCCGCCGCCAACTAACACTCCTTCCACACCACCACCAACCGCA

               *               
        232 GCAGCTCCGCCGCCAACTA
          1 GCAACTCCGCCGCCAACTA

        251 GTCCTCCCTC


Statistics
Matches: 64,  Mismatches: 3, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  48   64  1.00

ACGTcount: A:0.27, C:0.51, G:0.10, T:0.11


Consensus pattern (48 bp):   
GCAACTCCGCCGCCAACTAACACTCCTTCCACACCACCACCAACCGCA
Done.