Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_38093

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 700

Length: 1167
ACGTcount: A:0.29, C:0.15, G:0.33, T:0.24


Found at i:562 original size:18 final size:19

Alignment explanation


    Indices: 539--575  Score: 58
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        529 GCAGGTGCAT

                       *       
        539 CTGGTGGT-GTTGGAGGGG
          1 CTGGTGGTCGTGGGAGGGG

                               
        557 CTGGTGGTCGTGGGAGGGG
          1 CTGGTGGTCGTGGGAGGGG

        576 TCGAGGTGCT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18    8  0.47
  19    9  0.53

ACGTcount: A:0.05, C:0.08, G:0.62, T:0.24


Consensus pattern (19 bp):   
CTGGTGGTCGTGGGAGGGG

Done.