Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_07991

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 424

Length: 708
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.24


Found at i:565 original size:6 final size:6

Alignment explanation


    Indices: 554--578  Score: 50
    Period size: 6  Copynumber: 4.2  Consensus size: 6

        544 TCTCACTCTG

                                         
        554 CATCTT CATCTT CATCTT CATCTT C
          1 CATCTT CATCTT CATCTT CATCTT C

        579 CACAACGTTA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   19  1.00

ACGTcount: A:0.16, C:0.36, G:0.00, T:0.48


Consensus pattern (6 bp):   
CATCTT

Done.