Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_40142

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 475

Length: 792
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.30


Found at i:49 original size:15 final size:16

Alignment explanation


    Indices: 29--65  Score: 60
    Period size: 15  Copynumber: 2.4  Consensus size: 16

         19 TTACCTCCGC

                            
         29 CTTCTTCTCCTTC-TT
          1 CTTCTTCTCCTTCGTT

                            
         44 CTTCTTCTCCTTCGTT
          1 CTTCTTCTCCTTCGTT

                   
         60 -TTCTTC
          1 CTTCTTC

         66 ACATTGTTTT


Statistics
Matches: 21,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  15   19  0.90
  16    2  0.10

ACGTcount: A:0.00, C:0.38, G:0.03, T:0.59


Consensus pattern (16 bp):   
CTTCTTCTCCTTCGTT
Done.