Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_23015

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5349
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29


Found at i:162 original size:18 final size:18

Alignment explanation


    Indices: 139--174  Score: 54
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        129 ACTCACTTCT

                              
        139 CCTTCGCCTCCGCCTCCG
          1 CCTTCGCCTCCGCCTCCG

                  *     *     
        157 CCTTCGTCTCCGTCTCCG
          1 CCTTCGCCTCCGCCTCCG

        175 TCGGATTCGG


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.00, C:0.56, G:0.17, T:0.28


Consensus pattern (18 bp):   
CCTTCGCCTCCGCCTCCG
Done.