Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_30600

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5188
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32


Found at i:1838 original size:30 final size:30

Alignment explanation


    Indices: 1804--1865  Score: 124
    Period size: 30  Copynumber: 2.1  Consensus size: 30

       1794 AATCTATTCA

                                          
       1804 GGATGCAAGACCATCAGATCAGGTTGTTAT
          1 GGATGCAAGACCATCAGATCAGGTTGTTAT

                                          
       1834 GGATGCAAGACCATCAGATCAGGTTGTTAT
          1 GGATGCAAGACCATCAGATCAGGTTGTTAT

              
       1864 GG
          1 GG

       1866 TTGGCTGCTG


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   32  1.00

ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26


Consensus pattern (30 bp):   
GGATGCAAGACCATCAGATCAGGTTGTTAT
Done.