Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_19598

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 849

Length: 1416
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.29


Found at i:1221 original size:21 final size:21

Alignment explanation


    Indices: 1195--1237  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1185 GTGGAAAATG

                                 
       1195 GTGCTCGCACTGGCATTTGCA
          1 GTGCTCGCACTGGCATTTGCA

                                 
       1216 GTGCTCGCACTGGCATTTGCA
          1 GTGCTCGCACTGGCATTTGCA

             
       1237 G
          1 G

       1238 GCTATGTAGT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.14, C:0.28, G:0.30, T:0.28


Consensus pattern (21 bp):   
GTGCTCGCACTGGCATTTGCA
Done.