Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_40967

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 450

Length: 750
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.23


Found at i:390 original size:18 final size:19

Alignment explanation


    Indices: 348--390  Score: 52
    Period size: 19  Copynumber: 2.3  Consensus size: 19

        338 GGAGAGGAGG

                 *             
        348 ATTGACAAGGAAGTGCAAC
          1 ATTGAGAAGGAAGTGCAAC

             *         *       
        367 AGTGAGAAGGAGGTG-AAC
          1 ATTGAGAAGGAAGTGCAAC

                  
        385 ATTGAG
          1 ATTGAG

        391 CAGCCAGTGC


Statistics
Matches: 20,  Mismatches: 4, Indels: 1
        0.80            0.16        0.04

Matches are distributed among these distances:
  18    8  0.40
  19   12  0.60

ACGTcount: A:0.40, C:0.09, G:0.35, T:0.16


Consensus pattern (19 bp):   
ATTGAGAAGGAAGTGCAAC
Done.