Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_12626

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1782
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.26


Found at i:1291 original size:24 final size:24

Alignment explanation


    Indices: 1225--1291  Score: 71
    Period size: 24  Copynumber: 2.8  Consensus size: 24

       1215 ACAACCTGTG

                            * *    *
       1225 TTAGCACAAGCACCGCAATCATTG
          1 TTAGCACAAGCACCGCCACCATTA

             **         *           
       1249 TCGGCACAAGCAGCGCCACCATTA
          1 TTAGCACAAGCACCGCCACCATTA

                          *    
       1273 TTAGCACAAGCACCACCAC
          1 TTAGCACAAGCACCGCCAC

       1292 AACCATCAAA


Statistics
Matches: 33,  Mismatches: 10, Indels: 0
        0.77            0.23        0.00

Matches are distributed among these distances:
  24   33  1.00

ACGTcount: A:0.33, C:0.36, G:0.16, T:0.15


Consensus pattern (24 bp):   
TTAGCACAAGCACCGCCACCATTA
Done.