Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_10444

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2457
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26


Found at i:1505 original size:84 final size:84

Alignment explanation


    Indices: 1364--1534  Score: 306
    Period size: 84  Copynumber: 2.0  Consensus size: 84

       1354 GAAGGTGAAA

                         *                                                   
       1364 ATGACAGAAGCAATGAAGATAACGAGTCATGTTCAGGTTCAGAGTTTTCCGACGGTGACGAAGAG
          1 ATGACAGAAGCAACGAAGATAACGAGTCATGTTCAGGTTCAGAGTTTTCCGACGGTGACGAAGAG

                               
       1429 GATCTGAAGTCTGAGGAAG
         66 GATCTGAAGTCTGAGGAAG

                                                             *  *        *   
       1448 ATGACAGAAGCAACGAAGATAACGAGTCATGTTCAGGTTCAGAGTTTTCTGATGGTGACGAGGAG
          1 ATGACAGAAGCAACGAAGATAACGAGTCATGTTCAGGTTCAGAGTTTTCCGACGGTGACGAAGAG

                               
       1513 GATCTGAAGTCTGAGGAAG
         66 GATCTGAAGTCTGAGGAAG

               
       1532 ATG
          1 ATG

       1535 GCATGGGAAA


Statistics
Matches: 83,  Mismatches: 4, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  84   83  1.00

ACGTcount: A:0.33, C:0.13, G:0.32, T:0.22


Consensus pattern (84 bp):   
ATGACAGAAGCAACGAAGATAACGAGTCATGTTCAGGTTCAGAGTTTTCCGACGGTGACGAAGAG
GATCTGAAGTCTGAGGAAG
Done.