Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_03140

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 783

Length: 1305
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29


Found at i:98 original size:31 final size:31

Alignment explanation


    Indices: 60--120  Score: 88
    Period size: 31  Copynumber: 2.0  Consensus size: 31

         50 TAACCCGTGT

                        *                   
         60 GATGTCCATCATGAA-GATATCAAAGCCGTTA
          1 GATGTCCATCA-CAAGGATATCAAAGCCGTTA

                                  *       
         91 GATGTCCATCACAAGGATATCAGAGCCGTT
          1 GATGTCCATCACAAGGATATCAAAGCCGTT

        121 GATCTTGCAA


Statistics
Matches: 27,  Mismatches: 2, Indels: 2
        0.87            0.06        0.06

Matches are distributed among these distances:
  30    2  0.07
  31   25  0.93

ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25


Consensus pattern (31 bp):   
GATGTCCATCACAAGGATATCAAAGCCGTTA
Done.