Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_35841

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 504

Length: 840
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25


Found at i:481 original size:21 final size:21

Alignment explanation


    Indices: 457--513  Score: 69
    Period size: 21  Copynumber: 2.7  Consensus size: 21

        447 GCAACTCCTC

                 *             * 
        457 CAACAACAACAACAGCAACTG
          1 CAACATCAACAACAGCAACAG

                *             *  
        478 CAACTTCAACAACAGCAAGAG
          1 CAACATCAACAACAGCAACAG

                  *        
        499 CAACATGAACAACAG
          1 CAACATCAACAACAG

        514 TTACAGTTGA


Statistics
Matches: 30,  Mismatches: 6, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  21   30  1.00

ACGTcount: A:0.51, C:0.30, G:0.12, T:0.07


Consensus pattern (21 bp):   
CAACATCAACAACAGCAACAG
Done.