Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_30016

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 606

Length: 1011
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24


Found at i:200 original size:23 final size:23

Alignment explanation


    Indices: 164--207  Score: 63
    Period size: 23  Copynumber: 1.9  Consensus size: 23

        154 CTTCCACCTG

                                   
        164 AAGTTAGAGAGGCTCAAGAAAAA
          1 AAGTTAGAGAGGCTCAAGAAAAA

                           *      
        187 AAGTTAG-GAGGGCTTAAGAAA
          1 AAGTTAGAGA-GGCTCAAGAAA

        208 CAACAAGAAA


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  22    2  0.11
  23   17  0.89

ACGTcount: A:0.48, C:0.07, G:0.30, T:0.16


Consensus pattern (23 bp):   
AAGTTAGAGAGGCTCAAGAAAAA
Done.