Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_10881

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 300

Length: 501
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28


Found at i:350 original size:51 final size:51

Alignment explanation


    Indices: 287--389  Score: 154
    Period size: 51  Copynumber: 2.0  Consensus size: 51

        277 GAAACTCTGT

                           *     *             *                
        287 CGGATCCGATTTCTCGTCAAACGTATGATTATGAATTGG-GCTTGGTTAATC
          1 CGGATCCGATTTCTCATCAAAAGTATGATTATGAAATGGAG-TTGGTTAATC

                                    *                          
        338 CGGATCCGATTTCTCATCAAAAGTTTGATTATGAAATGGAGTTGGTTAATC
          1 CGGATCCGATTTCTCATCAAAAGTATGATTATGAAATGGAGTTGGTTAATC

             
        389 C
          1 C

        390 AATGGGGTTT


Statistics
Matches: 47,  Mismatches: 4, Indels: 2
        0.89            0.08        0.04

Matches are distributed among these distances:
  51   46  0.98
  52    1  0.02

ACGTcount: A:0.26, C:0.17, G:0.22, T:0.35


Consensus pattern (51 bp):   
CGGATCCGATTTCTCATCAAAAGTATGATTATGAAATGGAGTTGGTTAATC
Done.