Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_08813

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 862

Length: 1437
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29


Found at i:102 original size:18 final size:18

Alignment explanation


    Indices: 74--108  Score: 54
    Period size: 18  Copynumber: 1.9  Consensus size: 18

         64 CTTCTTTCCC

                               
         74 TTTCTTTCTTCATCTTCTT
          1 TTTCTTTCTTCA-CTTCTT

                             
         93 TTTC-TTCTTCACTTCT
          1 TTTCTTTCTTCACTTCT

        109 CCTGTTACTG


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  17    5  0.31
  18    7  0.44
  19    4  0.25

ACGTcount: A:0.06, C:0.29, G:0.00, T:0.66


Consensus pattern (18 bp):   
TTTCTTTCTTCACTTCTT
Done.