Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_31163

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 203

Length: 339
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.29


Found at i:300 original size:17 final size:17

Alignment explanation


    Indices: 278--310  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

        268 GATGAGGTAG

                       *     
        278 AAGGATTTGATGATGAA
          1 AAGGATTTGATAATGAA

                            
        295 AAGGATTTGATAATGA
          1 AAGGATTTGATAATGA

        311 CTTCCTGTGT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.42, C:0.00, G:0.27, T:0.30


Consensus pattern (17 bp):   
AAGGATTTGATAATGAA
Done.