Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_25458

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 312
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27


Found at i:257 original size:6 final size:6

Alignment explanation


    Indices: 248--278  Score: 53
    Period size: 6  Copynumber: 5.2  Consensus size: 6

        238 AAAGAGTCCA

                       *                        
        248 ACCATC ACCACC ACCATC ACCATC ACCATC A
          1 ACCATC ACCATC ACCATC ACCATC ACCATC A

        279 TCTTCCTCTT


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   6   23  1.00

ACGTcount: A:0.35, C:0.52, G:0.00, T:0.13


Consensus pattern (6 bp):   
ACCATC

Done.