Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_13624

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 529

Length: 882
ACGTcount: A:0.26, C:0.25, G:0.28, T:0.21


Found at i:154 original size:6 final size:6

Alignment explanation


    Indices: 103--154  Score: 59
    Period size: 6  Copynumber: 8.7  Consensus size: 6

         93 CGAGGCTGAA

                 *      *          *                       *     * 
        103 GCTCAA GCTCAA GCTCAG GCACAG GCTCAG GCTCAG GCTCAA GCTCTG
          1 GCTCAG GCTCAG GCTCAG GCTCAG GCTCAG GCTCAG GCTCAG GCTCAG

                
        151 GCTC
          1 GCTC

        155 GATACAACAA


Statistics
Matches: 40,  Mismatches: 6, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
   6   40  1.00

ACGTcount: A:0.21, C:0.35, G:0.27, T:0.17


Consensus pattern (6 bp):   
GCTCAG
Done.