Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_10961

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2034
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27


Found at i:1004 original size:24 final size:24

Alignment explanation


    Indices: 959--1005  Score: 58
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        949 GGGCATATAG

                     *       *      
        959 ATTGGTCTTCCATGATAGAGAATC
          1 ATTGGTCTTACATGATAAAGAATC

                       *  *        
        983 ATTGGTCTTACGTGGTAAAGAAT
          1 ATTGGTCTTACATGATAAAGAAT

       1006 GATCCCCGGA


Statistics
Matches: 19,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  24   19  1.00

ACGTcount: A:0.30, C:0.13, G:0.23, T:0.34


Consensus pattern (24 bp):   
ATTGGTCTTACATGATAAAGAATC
Done.