Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_27329

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 595

Length: 993
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27


Found at i:41 original size:13 final size:14

Alignment explanation


    Indices: 23--51  Score: 51
    Period size: 13  Copynumber: 2.1  Consensus size: 14

         13 TATCCTTCAC

                          
         23 TCCCATTTT-TTCT
          1 TCCCATTTTGTTCT

                          
         36 TCCCATTTTGTTCT
          1 TCCCATTTTGTTCT

              
         50 TC
          1 TC

         52 ATTCCCCTTT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13    9  0.60
  14    6  0.40

ACGTcount: A:0.07, C:0.31, G:0.03, T:0.59


Consensus pattern (14 bp):   
TCCCATTTTGTTCT
Done.