Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_31109

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 327
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.20


Found at i:131 original size:17 final size:18

Alignment explanation


    Indices: 109--144  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

         99 AATAAACACG

                              
        109 AAACCAAG-AGCAAAAGA
          1 AAACCAAGAAGCAAAAGA

                         *    
        126 AAACCAAGAAGCAGAAGA
          1 AAACCAAGAAGCAAAAGA

             
        144 A
          1 A

        145 GAGGAAGCTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  17    8  0.47
  18    9  0.53

ACGTcount: A:0.64, C:0.17, G:0.19, T:0.00


Consensus pattern (18 bp):   
AAACCAAGAAGCAAAAGA

Done.