Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_32737

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 889

Length: 1482
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28


Found at i:180 original size:21 final size:24

Alignment explanation


    Indices: 127--173  Score: 85
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        117 TTTGGTTCAT

                                    
        127 AATCAGCAGCACTTTCAACAACAC
          1 AATCAGCAGCACTTTCAACAACAC

                       *           
        151 AATCAGCAGCATTTTCAACAACA
          1 AATCAGCAGCACTTTCAACAACA

        174 ACAGCAGTGG


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   22  1.00

ACGTcount: A:0.43, C:0.30, G:0.09, T:0.19


Consensus pattern (24 bp):   
AATCAGCAGCACTTTCAACAACAC
Done.