Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_33596

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 730

Length: 1218
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.27


Found at i:429 original size:6 final size:6

Alignment explanation


    Indices: 420--448  Score: 58
    Period size: 6  Copynumber: 4.8  Consensus size: 6

        410 TTCTGCTTCT

                                             
        420 GAAAGG GAAAGG GAAAGG GAAAGG GAAAG
          1 GAAAGG GAAAGG GAAAGG GAAAGG GAAAG

        449 AAATTTCTCA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   23  1.00

ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00


Consensus pattern (6 bp):   
GAAAGG

Done.