Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17142

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 561

Length: 936
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.23


Found at i:91 original size:6 final size:6

Alignment explanation


    Indices: 82--113  Score: 64
    Period size: 6  Copynumber: 5.3  Consensus size: 6

         72 TCACCACCAG

                                                 
         82 CAGCAT CAGCAT CAGCAT CAGCAT CAGCAT CA
          1 CAGCAT CAGCAT CAGCAT CAGCAT CAGCAT CA

        114 ACAACAACAA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   26  1.00

ACGTcount: A:0.34, C:0.34, G:0.16, T:0.16


Consensus pattern (6 bp):   
CAGCAT

Done.