Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_30870

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3572
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27


Found at i:1414 original size:51 final size:51

Alignment explanation


    Indices: 1333--1439  Score: 151
    Period size: 51  Copynumber: 2.1  Consensus size: 51

       1323 TGATATGAGG

                 *       **                        *           
       1333 TTGGAGCAGGCTGTTGAATCAAGAAAAGAAGTTGGAATATCGGGGAGAAGT
          1 TTGGAACAGGCTGCCGAATCAAGAAAAGAAGTTGGAATAGCGGGGAGAAGT

                                *    *               *         
       1384 TTGGAACAGGCTGCCGAATCTAGAAGAGAAGTTGGAATAGCTGGGAGAAGT
          1 TTGGAACAGGCTGCCGAATCAAGAAAAGAAGTTGGAATAGCGGGGAGAAGT

                 
       1435 TTGGA
          1 TTGGA

       1440 GCCGAGCCAG


Statistics
Matches: 49,  Mismatches: 7, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  51   49  1.00

ACGTcount: A:0.34, C:0.09, G:0.36, T:0.21


Consensus pattern (51 bp):   
TTGGAACAGGCTGCCGAATCAAGAAAAGAAGTTGGAATAGCGGGGAGAAGT
Done.