Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17143

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1740
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28


Found at i:236 original size:21 final size:21

Alignment explanation


    Indices: 201--240  Score: 55
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        191 GTTGGTTGAA

                                  
        201 GAGGCTCAAAGATGTTGCTTAC
          1 GAGGCTCAAAGATG-TGCTTAC

                     *         
        223 GAGGC-CAATGATGTGCTT
          1 GAGGCTCAAAGATGTGCTT

        241 GATGAGTTTG


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  20    5  0.29
  21    7  0.41
  22    5  0.29

ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28


Consensus pattern (21 bp):   
GAGGCTCAAAGATGTGCTTAC
Done.