Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_02059

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 876

Length: 1461
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31


Found at i:1350 original size:15 final size:14

Alignment explanation


    Indices: 1330--1359  Score: 51
    Period size: 15  Copynumber: 2.1  Consensus size: 14

       1320 AAATCTGGTG

                           
       1330 GTGTTGTTGTGTAGA
          1 GTGTTGTTG-GTAGA

                          
       1345 GTGTTGTTGGTAGA
          1 GTGTTGTTGGTAGA

             
       1359 G
          1 G

       1360 CTTTTCCTTC


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    6  0.40
  15    9  0.60

ACGTcount: A:0.13, C:0.00, G:0.43, T:0.43


Consensus pattern (14 bp):   
GTGTTGTTGGTAGA
Done.