Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_30984

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 864

Length: 1440
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31


Found at i:1424 original size:3 final size:3

Alignment explanation


    Indices: 1416--1440  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

       1406 ATTGGCTTAT

                                             
       1416 AGA AGA AGA AGA AGA AGA AGA AGA A
          1 AGA AGA AGA AGA AGA AGA AGA AGA A


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00


Consensus pattern (3 bp):   
AGA

Done.