Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_35817

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 409

Length: 683
ACGTcount: A:0.20, C:0.13, G:0.41, T:0.26


Found at i:286 original size:45 final size:45

Alignment explanation


    Indices: 237--338  Score: 141
    Period size: 45  Copynumber: 2.3  Consensus size: 45

        227 AGGGATGTGC

                  *      *       *     *     *        *  
        237 AGGCAACGGTGGTGGTGGTGGTGGTTTTGGCAGGGGGGGAGGTAT
          1 AGGCAATGGTGGTCGTGGTGGAGGTTTCGGCAGAGGGGGAGGCAT

                          *                              
        282 AGGCAATGGTGGTCTTGGTGGAGGTTTCGGCAGAGGGGGAGGCAT
          1 AGGCAATGGTGGTCGTGGTGGAGGTTTCGGCAGAGGGGGAGGCAT

                        
        327 AGGCAATGGTGG
          1 AGGCAATGGTGG

        339 AACCGGGGTT


Statistics
Matches: 50,  Mismatches: 7, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  45   50  1.00

ACGTcount: A:0.17, C:0.09, G:0.52, T:0.23


Consensus pattern (45 bp):   
AGGCAATGGTGGTCGTGGTGGAGGTTTCGGCAGAGGGGGAGGCAT

Done.