Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_13817

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 981

Length: 1635
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25


Found at i:43 original size:12 final size:11

Alignment explanation


    Indices: 19--53  Score: 54
    Period size: 12  Copynumber: 3.2  Consensus size: 11

          9 TTTCAACAAG

                       
         19 TTTTCC-TTCA
          1 TTTTCCTTTCA

                        
         29 TTTTCCTTGTCA
          1 TTTTCCTT-TCA

                       
         41 TTTTCCTTTCA
          1 TTTTCCTTTCA

              
         52 TT
          1 TT

         54 GTCTGCAAAT


Statistics
Matches: 23,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  10    6  0.26
  11    6  0.26
  12   11  0.48

ACGTcount: A:0.09, C:0.26, G:0.03, T:0.63


Consensus pattern (11 bp):   
TTTTCCTTTCA
Done.