Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Cotton_A_23902
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2188
ACGTcount: A:0.29, C:0.44, G:0.07, T:0.20
Found at i:225 original size:36 final size:36
Alignment explanation
Indices: 178--257 Score: 124
Period size: 36 Copynumber: 2.2 Consensus size: 36
168 GTACTATTAT
* * *
178 AAGTCTCCACCTCCACCGGCTCCCACTTATGTTTAC
1 AAGTCACCACCTCCACCGGCACCAACTTATGTTTAC
*
214 AAGTCACCACCTCCACCGTCACCAACTTATGTTTAC
1 AAGTCACCACCTCCACCGGCACCAACTTATGTTTAC
250 AAGTCACC
1 AAGTCACC
258 TCCACCTCCT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.25, C:0.40, G:0.10, T:0.25
Consensus pattern (36 bp):
AAGTCACCACCTCCACCGGCACCAACTTATGTTTAC
Found at i:365 original size:114 final size:113
Alignment explanation
Indices: 214--485 Score: 456
Period size: 114 Copynumber: 2.4 Consensus size: 113
204 TTATGTTTAC
* *
214 AAGTCACCACCTCCACCG-TCACCAACTTATGTTTACAAGTCACCTCCACCTCCTGCGTACTACT
1 AAGTCTCCACCTCCACCGCTC-CC-ACTTATGTTTACAAGTCACCTCCACCTCCTACGTACTACT
* *
278 ACAAGTCTCCACCACCACCAAAGCATGTGGAACAGCCTCCATACTACTAT
64 ACAAGTCTCCACCACCACCAAAGCATGTGGAACAACCACCATACTACTAT
*
328 AAGTCTCCACCTCCACCAGCTCCCACTTATGTTTACAAGTCACCTCCACCTCCTATGTACTACTA
1 AAGTCTCCACCTCCACC-GCTCCCACTTATGTTTACAAGTCACCTCCACCTCCTACGTACTACTA
393 CAAGTCTCCACCACCACCAAAGCATGTGGAACAACCACCATACTACTAT
65 CAAGTCTCCACCACCACCAAAGCATGTGGAACAACCACCATACTACTAT
442 AAGTCTCCACCTCCACCGGCTCCCACTTATGTTTACAAGTCACC
1 AAGTCTCCACCTCCACC-GCTCCCACTTATGTTTACAAGTCACC
486 GCCTCCACCA
Statistics
Matches: 150, Mismatches: 6, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
114 145 0.97
115 3 0.02
116 2 0.01
ACGTcount: A:0.28, C:0.39, G:0.10, T:0.23
Consensus pattern (113 bp):
AAGTCTCCACCTCCACCGCTCCCACTTATGTTTACAAGTCACCTCCACCTCCTACGTACTACTAC
AAGTCTCCACCACCACCAAAGCATGTGGAACAACCACCATACTACTAT
Found at i:491 original size:36 final size:36
Alignment explanation
Indices: 442--530 Score: 106
Period size: 36 Copynumber: 2.5 Consensus size: 36
432 ATACTACTAT
* * *
442 AAGTCTCCACCTCCACCGGCTCCCACTTATGTTTAC
1 AAGTCACCACCTCCACCAGCGCCCACTTATGTTTAC
* * *
478 AAGTCACCGCCTCCACCATCGCCGACTTATGTTTAC
1 AAGTCACCACCTCCACCAGCGCCCACTTATGTTTAC
* *
514 AAGTCACCTCCACCACC
1 AAGTCACCACCTCCACC
531 TGTGTACTAC
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 45 1.00
ACGTcount: A:0.22, C:0.43, G:0.11, T:0.24
Consensus pattern (36 bp):
AAGTCACCACCTCCACCAGCGCCCACTTATGTTTAC
Found at i:665 original size:48 final size:48
Alignment explanation
Indices: 613--2107 Score: 908
Period size: 48 Copynumber: 31.2 Consensus size: 48
603 GCAGCCCCCG
* * *
613 TACTACTACAAGTCTCCTCCACCACCATCACCATCTCCTCCTCCACCA
1 TACTACTACAAGTCCCCACCACCACCATCACCATCTCCACCTCCACCA
* *
661 TACTATTACAAGTCCCCACCACCACCAGTTCA-C-TCTCCACCACCACCA
1 TACTACTACAAGTCCCCACCACCACCA--TCACCATCTCCACCTCCACCA
* * **** ** *
709 TACTACTACAAGTCCCCACCACCACCA-AAACATGAGGAACAACCTCCA
1 TACTACTACAAGTCCCCACCACCACCATCACCAT-CTCCACCTCCACCA
* * * * * * *
757 TACTACTACAAATCTCCTCCTCCACCATCGCCATCTCCTCCACCACCA
1 TACTACTACAAGTCCCCACCACCACCATCACCATCTCCACCTCCACCA
* * ** * ** *** *
805 TACTACTACAAATCCCCACCACCACCA-AAATATGTAGAAGAGCCCCCA
1 TACTACTACAAGTCCCCACCACCACCATCACCATCT-CCACCTCCACCA
* * * *
853 TACTACTACAAATCTCCTCCACCACCATCACCATCTCCTCCTCCACCA
1 TACTACTACAAGTCCCCACCACCACCATCACCATCTCCACCTCCACCA
* * *
901 TACTACTACAAGTCCCCACCACCACCATCTCCATCACCACCCCCACCA
1 TACTACTACAAGTCCCCACCACCACCATCACCATCTCCACCTCCACCA
* * * * *
949 TACTATTACAAATCACCC-CCACCACCATCGCCATCTCCTCATCCACCA
1 TACTACTACAAGTC-CCCACCACCACCATCACCATCTCCACCTCCACCA
* * ** *** *
997 TACTACTACAAGTCCCCACCACCACCGA--AACATGTAGAGGAGCCCCCA
1 TACTACTACAAGTCCCCACCACCACC-ATCACCATCTCCA-CCTCCACCA
*
1045 TACTACTACAAGTCTCCC-CCACCACCATCGA-CATCTCCTCCTCCACCA
1 TACTACTACAAGTC-CCCACCACCACCATC-ACCATCTCCACCTCCACCA
* * * * * *
1093 TACTATTACAAATCTCCTCCACCACCATCACCATCTCCTCCACCACCA
1 TACTACTACAAGTCCCCACCACCACCATCACCATCTCCACCTCCACCA
* * ** *** *
1141 TACTACTACAAGTCCCCACCACCACCGA--AACATGTAGAGGAGCCCCCA
1 TACTACTACAAGTCCCCACCACCACC-ATCACCATCTCCA-CCTCCACCA
* * * * * *
1189 TAC-ATCTACAAATCTCCTCCACCACCATCGCCATCTCCTCCACCACCA
1 TACTA-CTACAAGTCCCCACCACCACCATCACCATCTCCACCTCCACCA
* * * *
1237 TACTATTACAAGTCCCCACCACCACCAGTTCA--TTCTCCATCACCACCA
1 TACTACTACAAGTCCCCACCACCACCA--TCACCATCTCCACCTCCACCA
* * *
1285 TACTACTACAAGTCTCCACCACCACCAGT--CCACTCCCCACCCCCACCA
1 TACTACTACAAGTCCCCACCACCACCA-TCACCA-TCTCCACCTCCACCA
* * * * *
1333 TACTACTACAAGTCTCCACCACCACCTTCTCCCTCACCACCTCCACCA
1 TACTACTACAAGTCCCCACCACCACCATCACCATCTCCACCTCCACCA
* * * * ** ***
1381 TACTATTACAAGTCTCCACCACCACCA-AAACA-CGTAGAGGAGCC-CCA
1 TACTACTACAAGTCCCCACCACCACCATCACCATC-TCCA-CCTCCACCA
* * * * * *
1428 TAC-ATCTACAAATCTCCTCCACCACCATCGCCATCTCCTCCACCACCA
1 TACTA-CTACAAGTCCCCACCACCACCATCACCATCTCCACCTCCACCA
* * *
1476 TACTATTACAAGTCCCCACCACCACCAGT--TCAT-TCCCACCACCACCA
1 TACTACTACAAGTCCCCACCACCACCA-TCACCATCT-CCACCTCCACCA
* * * * *
1523 TACTACTACAAGTCTCCACCACCACCTTCTCCCTCACCACCTCCACCA
1 TACTACTACAAGTCCCCACCACCACCATCACCATCTCCACCTCCACCA
* * * ** *** *
1571 TACTATTACAAGTCCCCACCACCACCA-AAACA-CGTAGAGAAGCCCCCA
1 TACTACTACAAGTCCCCACCACCACCATCACCATC-TCCA-CCTCCACCA
* * * *
1619 TACATA-TACAAATCTCCTCCACCACCATCACCATCTCCTCCTCCACCA
1 TAC-TACTACAAGTCCCCACCACCACCATCACCATCTCCACCTCCACCA
* * * *
1667 TATTATTACAAGTCCCCACCACCACCAGT--CCACTTTCCACCACCACCA
1 TACTACTACAAGTCCCCACCACCACCA-TCACCA-TCTCCACCTCCACCA
* * * * * *
1715 TACTATTACAAGTCCCCTCCTCCACCATCGCCATCTCCTCCTCTACCA
1 TACTACTACAAGTCCCCACCACCACCATCACCATCTCCACCTCCACCA
* * *
1763 TACTATTACAAATCCCCACCACCACCAGT--CCACTCTCCACCCCCACCA
1 TACTACTACAAGTCCCCACCACCACCA-TCACCA-TCTCCACCTCCACCA
*
1811 TACTACTACAAATCCCCACCACCACCAGT--CCACTCTCCACCTCCACCA
1 TACTACTACAAGTCCCCACCACCACCA-TCACCA-TCTCCACCTCCACCA
* * *
1859 TACTACTACAAATCCCCACCACCACCATC-TCATTCACCACCTCCACCA
1 TACTACTACAAGTCCCCACCACCACCATCACCA-TCTCCACCTCCACCA
* * * * * * * *
1907 TACTATTACAAATCACCC-CCACCTCCAGTGA-AAGCTCCAGCACCTACC-
1 TACTACTACAAGTC-CCCACCACCACCA-TCACCATCTCCACCTCC-ACCA
* * * * * * *
1955 TACCATTACAACTCCCCTCCTCCACCATCACCATCTCCTCCTCCCCCA
1 TACTACTACAAGTCCCCACCACCACCATCACCATCTCCACCTCCACCA
* * *
2003 TACTACTACAAATCTCCC-CCACCACCAGT--CCACTCTCCCCCACCACCA
1 TACTACTACAAGTC-CCCACCACCACCA-TCACCA-TCTCCACCTCCACCA
* * * * * * * *
2051 TACTACTACAAATCTCCACCTCCTCCATCTCCCTCACCACCTCCTCCA
1 TACTACTACAAGTCCCCACCACCACCATCACCATCTCCACCTCCACCA
2099 TACTACTAC
1 TACTACTAC
2108 CACTCACCTC
Statistics
Matches: 1119, Mismatches: 259, Indels: 138
0.74 0.17 0.09
Matches are distributed among these distances:
45 1 0.00
46 6 0.01
47 116 0.10
48 934 0.83
49 55 0.05
50 7 0.01
ACGTcount: A:0.29, C:0.48, G:0.04, T:0.19
Consensus pattern (48 bp):
TACTACTACAAGTCCCCACCACCACCATCACCATCTCCACCTCCACCA
Found at i:735 original size:144 final size:144
Alignment explanation
Indices: 570--1885 Score: 1014
Period size: 144 Copynumber: 9.2 Consensus size: 144
560 CCACTTATGT
* * *
570 CTACAAGTCTCCACCACCACCAAAGCATGTAGAGCAGCCCCCGTACTACTACAAGTCTCCTCCAC
1 CTACAAGTCCCCACCACCACCAAAGCATGTAGAGCAGCCCCCATACTACTACAAGTCTCCACCAC
635 CACCATCACCATCTCCTCCTCCACCATACTATTACAAGTCCCCACCACCACCAGTTCACTCTCCA
66 CACCATCACCATCTCCTCCTCCACCATACTATTACAAGTCCCCACCACCACCAGTTCACTCTCCA
700 CCACCACCATACTA
131 CCACCACCATACTA
* * * * * * *
714 CTACAAGTCCCCACCACCACCAAAACATG-AGGAACAACCTCCATACTACTACAAATCTCCTCCT
1 CTACAAGTCCCCACCACCACCAAAGCATGTA-GAGCAGCCCCCATACTACTACAAGTCTCCACCA
* * * * ** * *
778 CCACCATCGCCATCTCCTCCACCACCATACTACTACAAATCCCCACCACCACCAAAAT-A-TGTA
65 CCACCATCACCATCTCCTCCTCCACCATACTATTACAAGTCCCCACCACCACC-AGTTCACTCTC
* ** *
841 GAAGAGCCCCCATACTA
129 CACCA-CCACCATACTA
* * * * * * *** ** * *
858 CTACAAATCTCCTCCACCACCATCACCATCT-CCTCCTCCACCATACTACTACAAGTCCCCACCA
1 CTACAAGTCCCCACCACCACCA-AAGCATGTAGAGCAGCCCCCATACTACTACAAGTCTCCACCA
* * * * * *
922 CCACCATCTCCATCACCACCCCCACCATACTATTACAAATCACCC-CCACCACCA--TCGCCATC
65 CCACCATCACCATCTCCTCCTCCACCATACTATTACAAGTC-CCCACCACCACCAGTTC-AC-TC
*
984 TCC-TCATCCACCATACTA
127 TCCACCA-CCACCATACTA
* *
1002 CTACAAGTCCCCACCACCACCGAAA-CATGTAGAGGAGCCCCCATACTACTACAAGTCTCCCCCA
1 CTACAAGTCCCCACCACCACC-AAAGCATGTAGAGCAGCCCCCATACTACTACAAGTCTCCACCA
* * *
1066 CCACCATCGA-CATCTCCTCCTCCACCATACTATTACAAATCTCCTCCACCACCA--TCACCATC
65 CCACCATC-ACCATCTCCTCCTCCACCATACTATTACAAGTCCCCACCACCACCAGTTCA-C-TC
*
1128 TCCTCCACCACCATACTA
127 TCCACCACCACCATACTA
* * *
1146 CTACAAGTCCCCACCACCACCGAAA-CATGTAGAGGAGCCCCCATAC-ATCTACAAATCTCCTCC
1 CTACAAGTCCCCACCACCACC-AAAGCATGTAGAGCAGCCCCCATACTA-CTACAAGTCTCCACC
* * *
1209 ACCACCATCGCCATCTCCTCCACCACCATACTATTACAAGTCCCCACCACCACCAGTTCATTCTC
64 ACCACCATCACCATCTCCTCCTCCACCATACTATTACAAGTCCCCACCACCACCAGTTCACTCTC
*
1274 CATCACCACCATACTA
129 CACCACCACCATACTA
* *** * *** *
1290 CTACAAGTCTCCACCACCACCAGTCCA-CT-CCCCACCCCCACCATACTACTACAAGTCTCCACC
1 CTACAAGTCCCCACCACCACCAAAGCATGTAGAGCA-GCCC-CCATACTACTACAAGTCTCCACC
* * * * * * *** * *
1353 ACCACCTTCTCCCTCACCACCTCCACCATACTATTACAAGTCTCCACCACCACCAAAACAC-GTA
64 ACCACCATCACCATCTCCTCCTCCACCATACTATTACAAGTCCCCACCACCACCAGTTCACTCTC
* **
1417 GAGGAGCC-CCATAC-A
129 CACCA-CCACCATACTA
* * * ** * **** * * *
1432 TCTACAAATCTCCTCCACCACCATCGCCATCTCCTCCA-CCACCATACTATTACAAGTCCCCACC
1 -CTACAAGTCCCCACCACCACCAAAG-CATGTAGAGCAGCCCCCATACTACTACAAGTCTCCACC
* * * * * * *
1496 ACCACCAGT--TCAT-TCCCACCACCACCATACTACTACAAGTCTCCACCACCACC-TTCTCCCT
64 ACCACCA-TCACCATCT-CCTCCTCCACCATACTATTACAAGTCCCCACCACCACCAGT-TCACT
* *
1557 CACCACCTCCACCATACTA
126 CTCCACCACCACCATACTA
* * * * * *
1576 TTACAAGTCCCCACCACCACCAAAACACGTAGAGAAGCCCCCATACATA-TACAAATCTCCTCCA
1 CTACAAGTCCCCACCACCACCAAAGCATGTAGAGCAGCCCCCATAC-TACTACAAGTCTCCACCA
* * *
1640 CCACCATCACCATCTCCTCCTCCACCATATTATTACAAGTCCCCACCACCACCAGTCCACTTTCC
65 CCACCATCACCATCTCCTCCTCCACCATACTATTACAAGTCCCCACCACCACCAGTTCACTCTCC
1705 ACCACCACCATACTA
130 ACCACCACCATACTA
* * * ** * *** ** ** * * *
1720 TTACAAGTCCCCTCCTCCACCATCGCCATCT-CCTCCTCTACCATACTATTACAAATCCCCACCA
1 CTACAAGTCCCCACCACCACCAAAG-CATGTAGAGCAGCCCCCATACTACTACAAGTCTCCACCA
* * * * *
1784 CCACCAGT--CCACTCTCCACCCCCACCATACTACTACAAATCCCCACCACCACCAGTCCACTCT
65 CCACCA-TCACCA-TCTCCTCCTCCACCATACTATTACAAGTCCCCACCACCACCAGTTCACTCT
*
1847 CCACCTCCACCATACTA
128 CCACCACCACCATACTA
*
1864 CTACAAATCCCCACCACCACCA
1 CTACAAGTCCCCACCACCACCA
1886 TCTCATTCAC
Statistics
Matches: 936, Mismatches: 191, Indels: 90
0.77 0.16 0.07
Matches are distributed among these distances:
141 1 0.00
142 49 0.05
143 130 0.14
144 726 0.78
145 23 0.02
146 7 0.01
ACGTcount: A:0.30, C:0.47, G:0.05, T:0.19
Consensus pattern (144 bp):
CTACAAGTCCCCACCACCACCAAAGCATGTAGAGCAGCCCCCATACTACTACAAGTCTCCACCAC
CACCATCACCATCTCCTCCTCCACCATACTATTACAAGTCCCCACCACCACCAGTTCACTCTCCA
CCACCACCATACTA
Found at i:1263 original size:27 final size:27
Alignment explanation
Indices: 1222--1407 Score: 113
Period size: 27 Copynumber: 7.6 Consensus size: 27
1212 ACCATCGCCA
* *
1222 TCTCCTCCACCACCATACTATTACAAG
1 TCTCCACCACCACCATACTACTACAAG
* * *
1249 TCCCCACCACCACC--AGT--T-C-AT
1 TCTCCACCACCACCATACTACTACAAG
*
1270 TCTCCATCACCACCATACTACTACAAG
1 TCTCCACCACCACCATACTACTACAAG
1297 TCTCCACCACCACCAGT-C--C-AC---
1 TCTCCACCACCACCA-TACTACTACAAG
* *
1318 TCCCCACCCCCACCATACTACTACAAG
1 TCTCCACCACCACCATACTACTACAAG
**
1345 TCTCCACCACCACC-T--T-CT-C-CC
1 TCTCCACCACCACCATACTACTACAAG
* * *
1366 TCACCACCTCCACCATACTATTACAAG
1 TCTCCACCACCACCATACTACTACAAG
1393 TCTCCACCACCACCA
1 TCTCCACCACCACCA
1408 AAACACGTAG
Statistics
Matches: 117, Mismatches: 22, Indels: 40
0.65 0.12 0.22
Matches are distributed among these distances:
20 1 0.01
21 39 0.33
22 3 0.03
23 6 0.05
24 6 0.05
25 5 0.04
26 3 0.03
27 53 0.45
28 1 0.01
ACGTcount: A:0.27, C:0.49, G:0.03, T:0.20
Consensus pattern (27 bp):
TCTCCACCACCACCATACTACTACAAG
Found at i:1502 original size:27 final size:27
Alignment explanation
Indices: 1467--1597 Score: 90
Period size: 27 Copynumber: 5.3 Consensus size: 27
1457 GCCATCTCCT
1467 CCACCACCATACTATTACAAGTCCCCA
1 CCACCACCATACTATTACAAGTCCCCA
* *
1494 CCACCACC--A--GTT-C-A-TTCCCA
1 CCACCACCATACTATTACAAGTCCCCA
* *
1514 CCACCACCATACTACTACAAGTCTCCA
1 CCACCACCATACTATTACAAGTCCCCA
* ** *
1541 CCACCACC-T--T-CT-C-CCTCACCA
1 CCACCACCATACTATTACAAGTCCCCA
*
1562 CCTCCACCATACTATTACAAGTCCCCA
1 CCACCACCATACTATTACAAGTCCCCA
1589 CCACCACCA
1 CCACCACCA
1598 AAACACGTAG
Statistics
Matches: 76, Mismatches: 15, Indels: 26
0.65 0.13 0.22
Matches are distributed among these distances:
20 13 0.17
21 13 0.17
22 4 0.05
23 4 0.05
24 3 0.04
25 3 0.04
26 3 0.04
27 33 0.43
ACGTcount: A:0.29, C:0.50, G:0.03, T:0.18
Consensus pattern (27 bp):
CCACCACCATACTATTACAAGTCCCCA
Found at i:1802 original size:21 final size:21
Alignment explanation
Indices: 1778--1858 Score: 65
Period size: 21 Copynumber: 3.6 Consensus size: 21
1768 TTACAAATCC
1778 CCACCACCACCAGTCCACTCT
1 CCACCACCACCAGTCCACTCT
* *
1799 CCACCCCCACCA-TACTACTACAAATCC
1 CCACCACCACCAGT-C--C-AC---TCT
1826 CCACCACCACCAGTCCACTCT
1 CCACCACCACCAGTCCACTCT
*
1847 CCACCTCCACCA
1 CCACCACCACCA
1859 TACTACTACA
Statistics
Matches: 47, Mismatches: 5, Indels: 16
0.69 0.07 0.24
Matches are distributed among these distances:
20 1 0.02
21 25 0.53
23 1 0.02
24 4 0.09
25 1 0.02
27 14 0.30
28 1 0.02
ACGTcount: A:0.27, C:0.57, G:0.02, T:0.14
Consensus pattern (21 bp):
CCACCACCACCAGTCCACTCT
Found at i:1829 original size:27 final size:27
Alignment explanation
Indices: 1759--1886 Score: 95
Period size: 27 Copynumber: 5.2 Consensus size: 27
1749 CTCCTCCTCT
*
1759 ACCATACTATTACAAATCCCCACCACC
1 ACCATACTACTACAAATCCCCACCACC
* *
1786 ACCAGT-C--C-AC---TCTCCACCCCC
1 ACCA-TACTACTACAAATCCCCACCACC
1807 ACCATACTACTACAAATCCCCACCACC
1 ACCATACTACTACAAATCCCCACCACC
* *
1834 ACCAGT-C--C-AC---TCTCCACCTCC
1 ACCA-TACTACTACAAATCCCCACCACC
1855 ACCATACTACTACAAATCCCCACCACC
1 ACCATACTACTACAAATCCCCACCACC
1882 ACCAT
1 ACCAT
1887 CTCATTCACC
Statistics
Matches: 76, Mismatches: 9, Indels: 32
0.65 0.08 0.27
Matches are distributed among these distances:
20 2 0.03
21 28 0.37
23 2 0.03
24 8 0.11
25 1 0.01
27 33 0.43
28 2 0.03
ACGTcount: A:0.31, C:0.51, G:0.02, T:0.16
Consensus pattern (27 bp):
ACCATACTACTACAAATCCCCACCACC
Found at i:1922 original size:27 final size:26
Alignment explanation
Indices: 1847--1923 Score: 74
Period size: 27 Copynumber: 3.1 Consensus size: 26
1837 AGTCCACTCT
*
1847 CCACCTCCACCATACTACTACAAATCC
1 CCACCTCCACCATACTA-TACAAATCA
* *
1874 CCACCACCACCAT-C--T-C-ATTCA
1 CCACCTCCACCATACTATACAAATCA
1895 CCACCTCCACCATACTATTACAAATCA
1 CCACCTCCACCATACTA-TACAAATCA
1922 CC
1 CC
1924 CCCACCTCCA
Statistics
Matches: 39, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
21 15 0.38
22 2 0.05
23 1 0.03
25 1 0.03
26 2 0.05
27 18 0.46
ACGTcount: A:0.32, C:0.48, G:0.00, T:0.19
Consensus pattern (26 bp):
CCACCTCCACCATACTATACAAATCA
Done.