Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_21070

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2556
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24


Found at i:2538 original size:30 final size:30

Alignment explanation


    Indices: 2483--2539  Score: 96
    Period size: 30  Copynumber: 1.9  Consensus size: 30

       2473 AAGGAAACAA

                               **         
       2483 ATGGCAAGGAAACGAATAGTGTCGAAGATC
          1 ATGGCAAGGAAACGAATAGCATCGAAGATC

                                       
       2513 ATGGCAAGGAAACGAATAGCATCGAAG
          1 ATGGCAAGGAAACGAATAGCATCGAAG

       2540 TTCAAGATGA


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  30   25  1.00

ACGTcount: A:0.42, C:0.14, G:0.30, T:0.14


Consensus pattern (30 bp):   
ATGGCAAGGAAACGAATAGCATCGAAGATC
Done.