Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_11499

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 222
ACGTcount: A:0.21, C:0.47, G:0.17, T:0.15


Found at i:124 original size:15 final size:15

Alignment explanation


    Indices: 104--140  Score: 74
    Period size: 15  Copynumber: 2.5  Consensus size: 15

         94 GCTGATCATC

                           
        104 CTCCTCCAGGCCATG
          1 CTCCTCCAGGCCATG

                           
        119 CTCCTCCAGGCCATG
          1 CTCCTCCAGGCCATG

                   
        134 CTCCTCC
          1 CTCCTCC

        141 TCCTGGACCA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   22  1.00

ACGTcount: A:0.11, C:0.51, G:0.16, T:0.22


Consensus pattern (15 bp):   
CTCCTCCAGGCCATG

Found at i:125 original size:18 final size:17

Alignment explanation


    Indices: 102--143  Score: 61
    Period size: 15  Copynumber: 2.5  Consensus size: 17

         92 ATGCTGATCA

                             
        102 TCCTCCTCCAGGCCATG
          1 TCCTCCTCCAGGCCATG

                             
        119 --CTCCTCCAGGCCATG
          1 TCCTCCTCCAGGCCATG

                      
        134 CTCCTCCTCC
          1 -TCCTCCTCC

        144 TGGACCAGGC


Statistics
Matches: 22,  Mismatches: 0, Indels: 5
        0.81            0.00        0.19

Matches are distributed among these distances:
  15   15  0.68
  18    7  0.32

ACGTcount: A:0.10, C:0.52, G:0.14, T:0.24


Consensus pattern (17 bp):   
TCCTCCTCCAGGCCATG
Done.