Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_10368

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 630

Length: 1050
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25


Found at i:1005 original size:9 final size:9

Alignment explanation


    Indices: 961--1016  Score: 60
    Period size: 9  Copynumber: 6.2  Consensus size: 9

        951 GAAGGAAGAG

                     
        961 GATGATGAC
          1 GATGATGAC

              *      
        970 GACGATGAC
          1 GATGATGAC

                     
        979 GATGATGAC
          1 GATGATGAC

                     *
        988 GA-GACTGAT
          1 GATGA-TGAC

                    *
        997 GATGATGAT
          1 GATGATGAC

                *    
       1006 GATGGTGAC
          1 GATGATGAC

              
       1015 GA
          1 GA

       1017 CAATGGCGAT


Statistics
Matches: 40,  Mismatches: 5, Indels: 4
        0.82            0.10        0.08

Matches are distributed among these distances:
   8    2  0.05
   9   36  0.90
  10    2  0.05

ACGTcount: A:0.32, C:0.11, G:0.36, T:0.21


Consensus pattern (9 bp):   
GATGATGAC
Done.